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1

SPIE Proceedings [SPIE SPIE Medical Imaging - Lake Buena Vista, Florida (Saturday 12 February 2011)] Medical Imaging 2011: Computer-Aided Diagnosis - Incorporating domain knowledge for tubule detection in breast histopathology using O'Callaghan neighborhoods

Basavanhally, Ajay, Summers, Ronald M., van Ginneken, Bram, Yu, Elaine, Xu, Jun, Ganesan, Shridar, Feldman, Michael, Tomaszewski, John, Madabhushi, Anant

Year:

2011

Language:

english

File:

PDF, 13.19 MB

english, 2011

2

[IEEE 2009 Ninth IEEE International Conference on Bioinformatics and BioEngineering (BIBE) - Taichung, Taiwan (2009.06.22-2009.06.24)] 2009 Ninth IEEE International Conference on Bioinformatics and BioEngineering - Expectation Maximization driven Geodesic Active Contour with Overlap Resolution (EMaGACOR): Application to Lymphocyte Segmentation on Breast Cancer Histopathology

Fatakdawala, Hussain, Basavanhally, Ajay, Xu, Jun, Bhanot, Gyan, Ganesan, Shridar, Feldman, Michael, Tomaszewski, John, Madabhushi, Anant

Year:

2009

Language:

english

File:

PDF, 414 KB

english, 2009

3

Sparse Non-negative Matrix Factorization (SNMF) based color unmixing for breast histopathological image analysis

Xu, Jun, Xiang, Lei, Wang, Guanhao, Ganesan, Shridar, Feldman, Michael, Shih, Natalie NC, Gilmore, Hannah, Madabhushi, Anant

Journal:

Computerized Medical Imaging and Graphics

Year:

2015

Language:

english

File:

PDF, 5.93 MB

english, 2015

4

Multi-field-of-view strategy for image-based outcome prediction of multi-parametric estrogen receptor-positive breast cancer histopathology: Comparison to Oncotype DX

Madabhushi, Anant, Basavanhally, Ajay, Shih, Natalie, Tomaszewski, John, Feldman, Michael, Mies, Carolyn, Ganesan, Shridar

Journal:

Journal of Pathology Informatics

Year:

2011

Language:

english

File:

PDF, 3.59 MB

english, 2011

5

Surveillance nanotechnology for multi-organ cancer metastases

Kantamneni, Harini, Zevon, Margot, Donzanti, Michael J., Zhao, Xinyu, Sheng, Yang, Barkund, Shravani R., McCabe, Lucas H., Banach-Petrosky, Whitney, Higgins, Laura M., Ganesan, Shridar, Riman, Richard

Journal:

Nature Biomedical Engineering

Year:

2017

Language:

english

File:

PDF, 3.36 MB

english, 2017

6

High-throughput adaptive sampling for whole-slide histopathology image analysis (HASHI) via convolutional neural networks: Application to invasive breast cancer detection

Cruz-Roa, Angel, Gilmore, Hannah, Basavanhally, Ajay, Feldman, Michael, Ganesan, Shridar, Shih, Natalie, Tomaszewski, John, Madabhushi, Anant, González, Fabio, Wang, Yuanquan

Journal:

Year:

2018

Language:

english

File:

PDF, 14.37 MB

english, 2018

7

Biomarkers for Response to Immune Checkpoint Blockade

Ganesan, Shridar, Mehnert, Janice

Journal:

Annual Review of Cancer Biology

Year:

2020

File:

PDF, 3.37 MB

2020

8

Evaluation of Single Nucleotide Polymorphisms (SNPs) in the p53 Binding Protein 1 (TP53BP1) Gene in Breast Cancer Patients Treated With Breast-Conserving Surgery and Whole-Breast Irradiation (BCS + RT)

Bruce G. Haffty, Sharad Goyal, Diptee Kulkarni, Camille Green, Alexi Vazquez, Devora Schiff, Meena S. Moran, Qifeng Yang, Shridar Ganesan, Kim M. Hirsfield

Journal:

International Journal of Radiation Oncology*Biology*Physics

Year:

2011

Language:

english

File:

PDF, 208 KB

english, 2011

9

Deficiency of the dual ubiquitin/SUMO ligase Topors results in genetic instability and an increased rate of malignancy in mice

Henderson Marshall, Mantu Bhaumik, Hana Aviv, Dirk Moore, Ming Yao, Jayeeta Dutta, Hussein Rahim, Murugesan Gounder, Shridar Ganesan, Ahamed Saleem, Eric Rubin

Journal:

BMC Molecular Biology

Year:

2010

Language:

english

File:

PDF, 2.07 MB

english, 2010

10

Computer-assisted assessment of the Human Epidermal Growth Factor Receptor 2 immunohistochemical assay in imaged histologic sections using a membrane isolation algorithm and quantitative analysis of positive controls

Bonnie H Hall, Monica Ianosi-Irimie, Parisa Javidian, Wenjin Chen, Shridar Ganesan, David J Foran

Journal:

BMC Medical Imaging

Year:

2008

Language:

english

File:

PDF, 3.35 MB

english, 2008

11

Clinicopathologic Presentation of Asian-Indian American (AIA) Women with Stage 0, I & II Breast Cancer

Malay Rao, Atif J. Khan, Meena S. Moran, Kim M. Hirshfield, Shridar Ganesan, Bruce G. Haffty, Sharad Goyal

Journal:

Journal of Immigrant and Minority Health

Year:

2011

Language:

english

File:

PDF, 163 KB

english, 2011

12

A 2D mechanistic model of breast ductal carcinoma in situ (DCIS) morphology and progression

Kerri-Ann Norton, Michael Wininger, Gyan Bhanot, Shridar Ganesan, Nicola Barnard, Troy Shinbrot

Journal:

Journal of Theoretical Biology

Year:

2010

Language:

english

File:

PDF, 814 KB

english, 2010

13

10.1038/79232

DePinho, Ronald A., Wong, Kwok-Kin, Chang, Sandy, Weiler, Sarah R., Ganesan, Shridar, Chaudhuri, Jayanta, Zhu, Chengming, Artandi, Steven E., Rudolph, Karl Lenhard, Gottlieb, Geoffrey J., Chin, Lynda,

Journal:

Nature Genetics

Year:

2000

Language:

english

File:

PDF, 722 KB

english, 2000

14

The disappearing Barr body in breast and ovarian cancers

Pageau, Gayle J., Hall, Lisa L., Ganesan, Shridar, Livingston, David M., Lawrence, Jeanne B.

Journal:

Nature Reviews Cancer

Year:

2007

Language:

english

File:

PDF, 366 KB

english, 2007

15

X chromosomal abnormalities in basal-like human breast cancer

Andrea L. Richardson, Zhigang C. Wang, Arcangela De Nicolo, Xin Lu, Myles Brown, Alexander Miron, Xiaodong Liao, J. Dirk Iglehart, David M. Livingston, Shridar Ganesan

Journal:

Year:

2006

Language:

english

File:

PDF, 933 KB

english, 2006

16

Portraits of breast cancer progression

Gul S Dalgin, Gabriela Alexe, Daniel Scanfeld, Pablo Tamayo, Jill P Mesirov, Shridar Ganesan, Charles DeLisi, Gyan Bhanot

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 5.05 MB

english, 2007

17

Identifying mRNA targets of microRNA dysregulated in cancer: with application to clear cell Renal Cell Carcinoma

Huiqing Liu, Angela R Brannon, Anupama R Reddy, Gabriela Alexe, Michael W Seiler, Alexandra Arreola, Jay H Oza, Ming Yao, David Juan, Louis S Liou, Shridar Ganesan, Arnold J Levine, WK Rathmell, Gyan

Journal:

BMC Systems Biology

Year:

2010

Language:

english

File:

PDF, 2.12 MB

english, 2010

18

BACH1, a Novel Helicase-like Protein, Interacts Directly with BRCA1 and Contributes to Its DNA Repair Function

Sharon B. Cantor, Daphne W. Bell, Shridar Ganesan, Elizabeth M. Kass, Ronny Drapkin, Steven Grossman, Doke C.R. Wahrer, Dennis C. Sgroi, William S. Lane, Daniel A. Haber, David M. Livingston

Journal:

Year:

2001

Language:

english

File:

PDF, 1.59 MB

english, 2001

19

BRCA1 Supports XIST RNA Concentration on the Inactive X Chromosome

Shridar Ganesan, Daniel P. Silver, Roger A. Greenberg, Dror Avni, Ronny Drapkin, Alexander Miron, Samuel C. Mok, Voahangy Randrianarison, Steven Brodie, Jennifer Salstrom, Theodore P. Rasmussen, Ann K

Journal:

Year:

2002

Language:

english

File:

PDF, 615 KB

english, 2002

20

Genetic Analysis of BRCA1 Function in a Defined Tumor Cell Line

Ralph Scully, Shridar Ganesan, Katerina Vlasakova, Junjie Chen, Merav Socolovsky, David M Livingston

Journal:

Year:

1999

Language:

english

File:

PDF, 251 KB

english, 1999

21

Interaction of the Fanconi Anemia Proteins and BRCA1 in a Common Pathway

Irene Garcia-Higuera, Toshiyasu Taniguchi, Shridar Ganesan, M.Stephen Meyn, Cynthia Timmers, James Hejna, Markus Grompe, Alan D D'Andrea

Journal:

Year:

2001

Language:

english

File:

PDF, 1.38 MB

english, 2001

22

Active Localization of the Retinoblastoma Protein in Chromatin and Its Response to S Phase DNA Damage

Dror Avni, Hong Yang, Fabio Martelli, Francesco Hofmann, Wael M. ElShamy, Shridar Ganesan, Ralph Scully, David M. Livingston

Journal:

Year:

2003

Language:

english

File:

PDF, 714 KB

english, 2003

23

Low p53 Binding Protein 1 (53BP1) Expression Is Associated With Increased Local Recurrence in Breast Cancer Patients Treated With Breast-Conserving Surgery and Radiotherapy

Hanmanth J.R. Neboori, Bruce G. Haffty, Hao Wu, Qifeng Yang, Amal Aly, Sharad Goyal, Devora Schiff, Meena S. Moran, Ryan Golhar, Chunxia Chen, Dirk Moore, Shridar Ganesan

Journal:

International Journal of Radiation Oncology*Biology*Physics

Year:

2012

Language:

english

File:

PDF, 730 KB

english, 2012

24

Tu1667 Genomic Changes Correlate With Transformed Phenotype in a Dynamic in-Vitro Model of Barrett's Carcinogenesis

Bajpai, Manisha, Seiler, Michael, Alexe, Gabriela, Bhanot, Gyan, Ganesan, Shridar, Das, Kiron M.

Journal:

Gastroenterology

Year:

2014

Language:

english

File:

PDF, 229 KB

english, 2014

25

MICRORNA EXPRESSION PROFILE IN CLEAR-CELL KIDNEY CANCER

Juan, David, Alexe, Gabriela, Antes, Travis, Foran, David, Madabhushi, Anant, Bhanot, Gyan, Delisi, Charles, Ganesan, Shridar, Liou, Louis

Journal:

The Journal of Urology

Year:

2008

Language:

english

File:

PDF, 124 KB

english, 2008

26

Immunocytochemical Localization of α-Protein Kinase C in Rat Pancreatic β-Cells during Glucose-Induced Insulin Secretion

Shridar Ganesan, Roberto Calle, Kathleen Zawalich, Katherine Greenawalt, Walter Zawalich, Gerald I. Shulman and Howard Rasmussen

Journal:

The Journal of Cell Biology

Year:

1992

Language:

english

File:

PDF, 4.44 MB

english, 1992

27

[IEEE 2011 8th IEEE International Symposium on Biomedical Imaging (ISBI 2011) - Chicago, IL, USA (2011.03.30-2011.04.2)] 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro - A boosted classifier for integrating multiple fields of view: Breast cancer grading in histopathology

Basavanhally, Ajay, Ganesan, Shridar, Shih, Natalie, Mies, Carolyn, Feldman, Michael, Tomaszewski, John, Madabhushi, Anant

Year:

2011

Language:

english

File:

PDF, 951 KB

english, 2011

28

[IEEE 2012 IEEE EMBS Conference on Biomedical Engineering and Sciences (IECBES 2012) - Langkawi, Malaysia (2012.12.17-2012.12.19)] 2012 IEEE-EMBS Conference on Biomedical Engineering and Sciences - 3D architecture of Ductal Carcinoma in situ from image reconstructions

Norton, Kerri-Ann, Fujibayashi, Mariko, Bhanot, Gyan, Shinbrot, Troy, Namazi, Sameera, Ganesan, Shridar, Barnard, Nicola, Iyatomi, Hitoshi, Ogawa, Koichi

Year:

2012

Language:

english

File:

PDF, 1.81 MB

english, 2012

29

ERG and CHD1 heterogeneity in prostate cancer: Use of confocal microscopy in assessment of microscopic foci

Tereshchenko, Irina V., Zhong, Hua, Chekmareva, Marina A., Kane-Goldsmith, Noriko, Santanam, Urmila, Petrosky, Whitney, Stein, Mark N., Ganesan, Shridar, Singer, Eric A., Moore, Dirk, Tischfield, Jay

Journal:

Year:

2014

Language:

english

File:

PDF, 1.23 MB

english, 2014

30

[IEEE 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI) - Boston, MA, USA (2009.06.28-2009.07.1)] 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Segmentation and classification of triple negative breast cancers using DCE-MRI

Agner, Shannon C., Xu, Jun, Fatakdawala, Hussain, Ganesan, Shridar, Madabhushi, Anant, Englander, Sarah, Rosen, Mark, Thomas, Kathleen, Schnall, Mitchell, Feldman, Michael, Tomaszewski, John

Year:

2009

Language:

english

File:

PDF, 284 KB

english, 2009

31

[IEEE 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI) - Boston, MA, USA (2009.06.28-2009.07.1)] 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Computer-aided prognosis of ER+ breast cancer histopathology and correlating survival outcome with Oncotype DX assay

Basavanhally, Ajay, Jun Xu,, Madabhushi, Anant, Ganesan, Shridar

Year:

2009

Language:

english

File:

PDF, 480 KB

english, 2009

32

IRF5 is a novel regulator of CXCL13 expression in breast cancer that regulates CXCR5+ B- and T-cell trafficking to tumor-conditioned media

Pimenta, Erica Maria, De, Saurav, Weiss, Ryan, Feng, Di, Hall, Kelly, Kilic, Sarah, Bhanot, Gyan, Ganesan, Shridar, Ran, Sophia, Barnes, Betsy J

Journal:

Immunology & Cell Biology

Year:

2015

Language:

english

File:

PDF, 1.88 MB

english, 2015

33

Multi-Field-of-View Framework for Distinguishing Tumor Grade in ER+ Breast Cancer From Entire Histopathology Slides

Basavanhally, Ajay, Ganesan, Shridar, Feldman, Michael, Shih, Natalie, Mies, Carolyn, Tomaszewski, John, Madabhushi, Anant

Journal:

IEEE Transactions on Biomedical Engineering

Year:

2013

Language:

english

File:

PDF, 3.36 MB

english, 2013

34

A hybrid approach to modeling the dynamics of macromolecules

Thacher, Thomas, Ganesan, Shridar, Askar, Attila, Rabitz, Herschel

Journal:

The Journal of Chemical Physics

Year:

1986

Language:

english

File:

PDF, 1.66 MB

english, 1986

35

Response to Crizotinib in a Patient with MET-mutant Papillary Renal Cell Cancer After Progression on Tivantinib

Stein, Mark N., Hirshfield, Kim M., Zhong, Hua, Singer, Eric A., Ali, Siraj M., Ganesan, Shridar

Journal:

European Urology

Year:

2015

Language:

english

File:

PDF, 630 KB

english, 2015

36

ERBB2 overexpression suppresses stress-induced autophagy and renders ERBB2-induced mammary tumorigenesis independent of monoallelic Becn1 loss

Lozy, Fred, Cai-McRae, Xiaofeng, Teplova, Irina, Price, Sandy, Reddy, Anupama, Bhanot, Gyan, Ganesan, Shridar, Vazquez, Alexei, Karantza, Vassiliki

Journal:

Year:

2014

Language:

english

File:

PDF, 3.64 MB

english, 2014

37

Triple-negative breast cancer

Hirshfield, Kim M., Ganesan, Shridar

Journal:

Current Opinion in Obstetrics & Gynecology

Year:

2014

Language:

english

File:

PDF, 294 KB

english, 2014

38

Metabotropic glutamate receptor 1 disrupts mammary acinar architecture and initiates malignant transformation of mammary epithelial cells

Teh, Jessica L. F., Shah, Raj, La Cava, Stephanie, Dolfi, Sonia C., Mehta, Madhura S., Kongara, Sameera, Price, Sandy, Ganesan, Shridar, Reuhl, Kenneth R., Hirshfield, Kim M., Karantza, Vassiliki, Che

Journal:

Breast Cancer Research and Treatment

Year:

2015

Language:

english

File:

PDF, 5.84 MB

english, 2015

39

SPIE Proceedings [SPIE SPIE Medical Imaging - San Diego, California, USA (Saturday 15 February 2014)] Medical Imaging 2014: Digital Pathology - Automatic detection of invasive ductal carcinoma in whole slide images with convolutional neural networks

Gurcan, Metin N., Madabhushi, Anant, Cruz-Roa, Angel, Basavanhally, Ajay, González, Fabio, Gilmore, Hannah, Feldman, Michael, Ganesan, Shridar, Shih, Natalie, Tomaszewski, John, Madabhushi, Anant

Year:

2014

Language:

english

File:

PDF, 3.28 MB

english, 2014

40

Glucose-Induced Translocation of Protein Kinase C in Rat Pancreatic Islets

Shridar Ganesan, Roberto Calle, Kathleen Zawalich, Joan I. Smallwood, Walter S. Zawalich and Howard Rasmussen

Journal:

Proceedings of the National Academy of Sciences

Year:

1990

Language:

english

File:

PDF, 1.11 MB

english, 1990

41

The Genomic Landscape of Renal Oncocytoma Identifies a Metabolic Barrier to Tumorigenesis

Joshi, Shilpy, Tolkunov, Denis, Aviv, Hana, Hakimi, Abraham A., Yao, Ming, Hsieh, James J., Ganesan, Shridar, Chan, Chang S., White, Eileen

Journal:

Year:

2015

Language:

english

File:

PDF, 5.66 MB

english, 2015

42

Yin and Yang of 4E-BP1 in Cancer

Wang, Ren, Ganesan, Shridar, Zheng, X.F. Steven

Journal:

Year:

2016

Language:

english

File:

PDF, 801 KB

english, 2016

43

SPIE Proceedings [SPIE SPIE Medical Imaging - Lake Buena Vista, FL (Saturday 7 February 2009)] Medical Imaging 2009: Computer-Aided Diagnosis - A boosted distance metric: application to content based image retrieval and classification of digitized histopathology

Naik, Jay, Karssemeijer, Nico, Giger, Maryellen L., Doyle, Scott, Basavanhally, Ajay, Ganesan, Shridar, Feldman, Michael D., Tomaszewski, John E., Madabhushi, Anant

Year:

2009

Language:

english

File:

PDF, 560 KB

english, 2009

44

[IMPERIAL COLLEGE PRESS Proceedings of the 7th Annual International Workshop on Bioinformatics and Systems Biology (IBSB 2007) - Institute of Medical Science, University of Tokyo, Japan (31 July – 2 August 2007)] Genome Informatics 2007 - BREAST CANCER STRATIFICATION FROM ANALYSIS OF MICRO-ARRAY DATA OF MICRO-DISSECTED SPECIMENS

ALEXE, GABRIELA, DALGIN, GUL S., SCANFELD, DANIEL, TAMAYO, PABLO, MESIROV, JILL P., GANESAN, SHRIDAR, DELISI, CHARLES, BHANOT, GYAN

Language:

english

File:

PDF, 611 KB

english

45

UHRF1 depletion causes a G 2 /M arrest, activation of DNA damage response and apoptosis

Tien, Amy L., Senbanerjee, Sucharita, Kulkarni, Atul, Mudbhary, Raksha, Goudreau, Bernadette, Ganesan, Shridar, Sadler, Kirsten C., Ukomadu, Chinweike

Journal:

Biochemical Journal

Year:

2011

Language:

english

File:

PDF, 1.63 MB

english, 2011

46

Replicating and Reshaping DNA: A Celebration of the Jubilee of the Double Helix || Association of BRCA1 with the Inactive X Chromosome and XIST RNA

Shridar Ganesan, Daniel P. Silver, Ronny Drapkin, Roger Greenberg, Jean Feunteun and David M. Livingston

Journal:

Philosophical Transactions Biological Sciences

Year:

2004

Language:

english

File:

PDF, 1.14 MB

english, 2004

47

A Novel Role of Chromodomain Protein CBX8 in DNA Damage Response

Oza, Jay, Ganguly, Bratati, Kulkarni, Atul, Ginjala, Vasudeva, Yao, Ming, Ganesan, Shridar

Journal:

Journal of Biological Chemistry

Year:

2016

Language:

english

File:

PDF, 2.09 MB

english, 2016

48

A novel role of chromodomain protein CBX8 in DNA damage response.

Oza, Jay, Ganguly, Bratati, Kulkarni, Atul, Ginjala, Vasudeva, Yao, Ming, Ganesan, Shridar

Journal:

Journal of Biological Chemistry

Year:

2017

Language:

english

File:

PDF, 172 KB

english, 2017

49

Integrating phosphoproteomics into the clinical management of prostate cancer

Cheng, Larry C., Tan, Victor M., Ganesan, Shridar, Drake, Justin M.

Journal:

Clinical and Translational Medicine

Year:

2017

Language:

english

File:

PDF, 1.52 MB

english, 2017

50

Comprehensive genomic profiling of malignant phyllodes tumors of the breast

Nozad, Sahar, Sheehan, Christine E., Gay, Laurie M., Elvin, Julia A., Vergilio, Jo-Anne, Suh, James, Ramkissoon, Shakti, Schrock, Alexa B., Hirshfield, Kim M., Ali, Nadia, Ganesan, Shridar, Ali, Siraj

Journal:

Breast Cancer Research and Treatment

Year:

2017

Language:

english

File:

PDF, 686 KB

english, 2017

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